PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001181.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 419aa    MW: 45387.8 Da    PI: 9.6166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001181.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05186208223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C++Cg+ F  ++ L+ H  + H
  Itr_sc001181.1_g00008.1 186 SCHKCGEQFGKWEALEAHHLSkH 208
                              6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280187208IPR007087Zinc finger, C2H2
SuperFamilySSF563994.03E-22210418No hitNo description
Gene3DG3DSA:3.90.228.103.7E-7211395IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MPAVWFSLKR SMHCKSEPSE VHNPKTRKEL NTILTRKPAG RSGCSRSIAN LKDVIHGSKR  60
HLEKPPSCSP RSIGSSEFLN PITHEVVLRN NSRCELRITS FGGFPDGLGG GGGGGGGSFV  120
GTLRPGTPGP GGHHTMHYFS SSQRNPAATP PRRTNSASFG EKEGIGFASK PRASLQIDSN  180
GCSSVSCHKC GEQFGKWEAL EAHHLSKHAV TELLEGDSSR KIVEIICRSS WLKSESQGGR  240
IEKVLKVHNT QKTLARFEEY REVVKIKASK LPKKHPRCLA DGNELLRFYG TTVGCSLGTG  300
GGCSLCTSDK CYVCQIIRNG FSTKNEIKDG IGVFTTSTSG RAFESIEASE GDPPPRKALI  360
VCRVIAGRVH RPLENIQEMA GQIGFDSLAG KVGLYSNIEE LYLLNPRALL PCFVVICKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267823.10.0PREDICTED: uncharacterized protein LOC104604941
RefseqXP_010267824.10.0PREDICTED: uncharacterized protein LOC104604941
RefseqXP_010267825.10.0PREDICTED: uncharacterized protein LOC104604941
TrEMBLA0A068UC140.0A0A068UC14_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000494910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-120C2H2 family protein